JZUS - Journal of Zhejiang University SCIENCE

Journal of Zhejiang University SCIENCE B

Accepted manuscript available online (unedited version)

Dynamic DNA methylation landscapes in plants from the whole genome aspect: characteristics and future perspectives

Author(s): Yurong HU, Wanmu ZHOU, Hui LU, Jiayan WU, Qinjie CHU
Affiliation(s): Institute of Crop Science, Zhejiang University, Hangzhou 310058, China
Corresponding email(s): Qinjie CHU, qinjiechu@zju.edu.cn
Key Words: DNA methylation; Whole-genome bisulfite sequencing (WGBS); Tissue specificity; Stress treatment; Evolution

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Yurong HU, Wanmu ZHOU, Hui LU, Jiayan WU, Qinjie CHU. Dynamic DNA methylation landscapes in plants from the whole genome aspect: characteristics and future perspectives[J]. Journal of Zhejiang University Science B,in press.Frontiers of Information Technology & Electronic Engineering,in press.https://doi.org//10.1631/jzus.B2500599

@article{title="Dynamic DNA methylation landscapes in plants from the whole genome aspect: characteristics and future perspectives",
author="Yurong HU, Wanmu ZHOU, Hui LU, Jiayan WU, Qinjie CHU",
journal="Journal of Zhejiang University Science B",
year="in press",
publisher="Zhejiang University Press & Springer",
doi="https://doi.org//10.1631/jzus.B2500599"
}

%0 Journal Article
%T Dynamic DNA methylation landscapes in plants from the whole genome aspect: characteristics and future perspectives
%A Yurong HU
%A Wanmu ZHOU
%A Hui LU
%A Jiayan WU
%A Qinjie CHU
%J Journal of Zhejiang University SCIENCE B
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%@ 1673-1581
%D in press
%I Zhejiang University Press & Springer
doi="https://doi.org//10.1631/jzus.B2500599"

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T1 - Dynamic DNA methylation landscapes in plants from the whole genome aspect: characteristics and future perspectives
A1 - Yurong HU
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A1 - Hui LU
A1 - Jiayan WU
A1 - Qinjie CHU
J0 - Journal of Zhejiang University Science B
SP -
EP -
%@ 1673-1581
Y1 - in press
PB - Zhejiang University Press & Springer
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doi="https://doi.org//10.1631/jzus.B2500599"

Abstract
Chinese Summary
Academic Network
Reviewer Comment

Abstract: DNA methylation, an important epigenetic modification, has been confirmed to act as an important regulator of gene expression and genome stability in plants. This review aimed to analyze DNA methylation landscapes in plants by integrating genome-wide DNA methylation data from 105 plant species, among which 53 species possess quantitative methylation levels for downstream analyses. We found that the levels of DNA methylation in plants are both interspecific and tissue-specific. Environmental stresses and evolutionary processes such as polyploidization, domestication and de-domestication can influence DNA methylation levels at the whole-genome level and single-gene level, respectively. Finally, we reviewed functional genes related to DNA methylation changes and highlighted the recent technological advances in multi-omics (e.g., scBS-seq, transcriptome, 3D chromatin architecture) for an improved interpretation of DNA methylation dynamics among plants and for environmental adaptation.

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