CLC number: R774
On-line Access: 2024-08-27
Received: 2023-10-17
Revision Accepted: 2024-05-08
Crosschecked: 2017-04-18
Cited: 0
Clicked: 5892
Yun Li, Qing Pan, Yang-shun Gu. Phenotype-genotype correlation with Sanger sequencing identified retinol dehydrogenase 12 (RDH12) compound heterozygous variants in a Chinese family with Leber congenital amaurosis[J]. Journal of Zhejiang University Science B,in press.Frontiers of Information Technology & Electronic Engineering,in press.https://doi.org/10.1631/jzus.B1600156 @article{title="Phenotype-genotype correlation with Sanger sequencing identified retinol dehydrogenase 12 (RDH12) compound heterozygous variants in a Chinese family with Leber congenital amaurosis", %0 Journal Article TY - JOUR
临床表型-基因型关联发现Leber先天性黑矇(LCA)家系新的RDH12基因复合杂合突变创新点:成功应用临床表型-基因型关联分析鉴定LCA家系致病基因,并发现新的RDH12基因复合杂合突变。 方法:收集一个中国常染色体隐性遗传三代LCA家系,详细分析该家系眼部表型特征(图1和表1),经临床表型-基因型关联分析确定RDH12为候选基因。Sanger测序发现新的RDH12基因复合杂合突变(图2),目标序列捕获高通量测序技术排除其他已知LCA相关基因(表2)。该家系成员基因型显示完整的共分离(图3),同时在600例普通人群中未发现该突变。 结论:RDH12基因复合杂合突变可能为该LCA家系的致病基因,临床表型-基因型关联分析在LCA分子遗传学诊断中有重要价值。 关键词组: Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article
Reference[1]Adzhubei, I.A., Schmidt, S., Peshkin, L., et al., 2010. A method and server for predicting damaging missense mutations. Nat. Methods, 7(4):248-249. ![]() [2]Bujakowska, K., Audo, I., Mohand-Said, S., et al., 2012. CRB1 mutations in inherited retinal dystrophies. Hum. Mutat., 33(2):306-315. ![]() [3]Chacon-Camacho, O.F., Zenteno, J.C., 2015. Review and update on the molecular basis of Leber congenital amaurosis. World J. Clin. Cases, 3(2):112-124. ![]() [4]Chrispell, J.D., Feathers, K.L., Kane, M.A., et al., 2009. Rdh12 activity and effects on retinoid processing in the murine retina. J. Biol. Chem., 284(32):21468-21477. ![]() [5]Chung, D.C., Traboulsi, E.I., 2009. Leber congenital amaurosis: clinical correlations with genotypes, gene therapy trials update, and future directions. J. AAPOS, 13(6): 587-592. ![]() [6]den Hollander, A.I., Koenekoop, R.K., Yzer, S., et al., 2006. Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis. Am. J. Hum. Genet., 79(3):556-561. ![]() [7]den Hollander, A.I., Roepman, R., Koenekoop, R.K., et al., 2008. Leber congenital amaurosis: genes, proteins and disease mechanisms. Prog. Retin. Eye Res., 27(4):391-419. ![]() [8]Dharmaraj, S.R., Silva, E.R., Pina, A.L., et al., 2000. Mutational analysis and clinical correlation in Leber congenital amaurosis. Ophthalmic Genet., 21(3):135-150. ![]() [9]Estrada-Cuzcano, A., Koenekoop, R.K., Coppieters, F., et al., 2011. IQCB1 mutations in patients with Leber congenital amaurosis. Invest. Ophthalmol. Vis. Sci., 52(2):834-839. ![]() [10]Gong, B., Wei, B., Huang, L., et al., 2015. Exome sequencing identified a recessive RDH12 mutation in a family with severe early-onset retinitis pigmentosa. J. Ophthalmol., 2015:942740. ![]() [11]Haeseleer, F., Jang, G.F., Imanishi, Y., et al., 2002. Dual-substrate specificity short chain retinol dehydrogenases from the vertebrate retina. J. Biol. Chem., 277(47):45537-45546. ![]() [12]Hong, N., Chen, Y., Xie, C., et al., 2014. Identification of a novel mutation in a Chinese family with Nance-Horan syndrome by whole exome sequencing. J. Zhejiang Univ.-Sci. B (Biomed. & Biotechnol.), 15(8):727-734. ![]() [13]Jacobson, S.G., Cideciyan, A.V., Aleman, T.S., et al., 2007. RDH12 and RPE65, visual cycle genes causing Leber congenital amaurosis, differ in disease expression. Invest. Ophthalmol. Vis. Sci., 48(1):332-338. ![]() [14]Jacobson, S.G., Cideciyan, A.V., Peshenko, I.V., et al., 2013. Determining consequences of retinal membrane guanylyl cyclase (RetGC1) deficiency in human Leber congenital amaurosis en route to therapy: residual cone-photoreceptor vision correlates with biochemical properties of the mutants. Hum. Mol. Genet., 22(1):168-183. ![]() [15]Janecke, A.R., Thompson, D.A., Utermann, G., et al., 2004. Mutations in RDH12 encoding a photoreceptor cell retinol dehydrogenase cause childhood-onset severe retinal dystrophy. Nat. Genet., 36(8):850-854. ![]() [16]Kiser, P.D., Golczak, M., Maeda, A., et al., 2012. Key enzymes of the retinoid (visual) cycle in vertebrate retina. Biochim. Biophys. Acta, 1821(1):137-151. ![]() [17]Koenekoop, R.K., 2004. An overview of Leber congenital amaurosis: a model to understand human retinal development. Surv. Ophthalmol., 49(4):379-398. ![]() [18]Kolandaivelu, S., Ramamurthy, V., 2014. AIPL1 protein and its indispensable role in cone photoreceptor function and survival. Adv. Exp. Med. Biol., 801:43-48. ![]() [19]Kuniyoshi, K., Sakuramoto, H., Yoshitake, K., et al., 2014. Longitudinal clinical course of three Japanese patients with Leber congenital amaurosis/early-onset retinal dystrophy with RDH12 mutation. Doc. Ophthalmol., 128(3): 219-228. ![]() [20]Kurth, I., Thompson, D.A., Ruther, K., et al., 2007. Targeted disruption of the murine retinal dehydrogenase gene Rdh12 does not limit visual cycle function. Mol. Cell. Biol., 27(4):1370-1379. ![]() [21]Li, H., 2011. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics, 27(21):2987-2993. ![]() [22]Li, H., Durbin, R., 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25(14):1754-1760. ![]() [23]Lin, F., Huang, Z., Lu, N., et al., 2014. Controversial opinion: evaluation of EGR1 and LAMA2 loci for high myopia in Chinese populations. J. Zhejiang Univ. Sci.-B (Biomed. & Biotechnol.), 17(3):225-235. ![]() [24]Mackay, D.S., Dev, B.A., Moradi, P., et al., 2011. RDH12 retinopathy: novel mutations and phenotypic description. Mol. Vis., 17:2706-2716. ![]() [25]Maeda, A., Maeda, T., Imanishi, Y., et al., 2006. Retinol dehydrogenase (RDH12) protects photoreceptors from light-induced degeneration in mice. J. Biol. Chem., 281(49):37697-37704. ![]() [26]Maeda, A., Maeda, T., Sun, W., et al., 2007. Redundant and unique roles of retinol dehydrogenases in the mouse retina. Proc. Natl. Acad. Sci. USA, 104(49):19565-19570. ![]() [27]McKenna, A., Hanna, M., Banks, E., et al., 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20(9):1297-1303. ![]() [28]Milam, A.H., Barakat, M.R., Gupta, N., et al., 2003. Clinicopathologic effects of mutant GUCY2D in Leber congenital amaurosis. Ophthalmology, 110(3):549-558. ![]() [29]Ng, P.C., Henikoff, S., 2003. SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res., 31(13):3812-3814. ![]() [30]Pasadhika, S., Fishman, G.A., Stone, E.M., et al., 2010. Differential macular morphology in patients with RPE65-, CEP290-, GUCY2D-, and AIPL1-related Leber congenital amaurosis. Invest. Ophthalmol. Vis. Sci., 51(5):2608-2614. ![]() [31]Perrault, I., Hanein, S., Gerber, S., et al., 2004. Retinal dehydrogenase 12 (RDH12) mutations in Leber congenital amaurosis. Am. J. Hum. Genet., 75(4):639-646. ![]() [32]Perrault, I., Hanein, S., Zanlonghi, X., et al., 2012. Mutations in NMNAT1 cause Leber congenital amaurosis with early-onset severe macular and optic atrophy. Nat. Genet., 44(9):975-977. ![]() [33]Schuster, A., Janecke, A.R., Wilke, R., et al., 2007. The phenotype of early-onset retinal degeneration in persons with RDH12 mutations. Invest. Ophthalmol. Vis. Sci., 48(4): 1824-1831. ![]() [34]Sergouniotis, P.I., Davidson, A.E., Mackay, D.S., et al., 2011. Recessive mutations in KCNJ13, encoding an inwardly rectifying potassium channel subunit, cause Leber congenital amaurosis. Am. J. Hum. Genet., 89(1):183-190. ![]() [35]Sherwin, J.C., Hewitt, A.W., Ruddle, J.B., et al., 2008. Genetic isolates in ophthalmic diseases. Ophthalmic Genet., 29(4): 149-161. ![]() [36]Sodi, A., Caputo, R., Passerini, I., et al., 2010. Novel RDH12 sequence variations in Leber congenital amaurosis. J. AAPOS, 14(4):349-351. ![]() [37]Stone, E.M., 2007. Leber congenital amaurosis—a model for efficient genetic testing of heterogeneous disorders: LXIV Edward Jackson Memorial Lecture. Am. J. Ophthalmol., 144(6):791-811. ![]() [38]Tan, M.H., Mackay, D.S., Cowing, J., et al., 2012. Leber congenital amaurosis associated with AIPL1: challenges in ascribing disease causation, clinical findings, and implications for gene therapy. PLoS ONE, 7(3):e32330. ![]() [39]Testa, F., Surace, E.M., Rossi, S., et al., 2011. Evaluation of Italian patients with Leber congenital amaurosis due to AIPL1 mutations highlights the potential applicability of gene therapy. Invest. Ophthalmol. Vis. Sci., 52(8):5618-5624. ![]() [40]Traboulsi, E.I., 2010. The Marshall M. Parks memorial lecture: making sense of early-onset childhood retinal dystrophies— the clinical phenotype of Leber congenital amaurosis. Br. J. Ophthalmol., 94(10):1281-1287. ![]() [41]Valverde, D., Pereiro, I., Vallespin, E., et al., 2009. Complexity of phenotype-genotype correlations in Spanish patients with RDH12 mutations. Invest. Ophthalmol. Vis. Sci., 50(3):1065-1068. ![]() [42]Wang, H., Wang, X., Zou, X., et al., 2015. Comprehensive molecular diagnosis of a large Chinese Leber congenital amaurosis cohort. Invest. Ophthalmol. Vis. Sci., 56(6): 3642-3655. ![]() [43]Xu, Y., Xiao, X., Li, S., et al., 2016. Molecular genetics of Leber congenital amaurosis in Chinese: new data from 66 probands and mutation overview of 159 probands. Exp. Eye Res., 149:93-99. ![]() [44]Ye, K., Schulz, M.H., Long, Q., et al., 2009. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics, 25(21):2865-2871. ![]() [45]Yucel-Yilmaz, D., Tarlan, B., Kiratli, H., et al., 2014. Genome-wide homozygosity mapping in families with Leber congenital amaurosis identifies mutations in AIPL1 and RDH12 genes. DNA Cell Biol., 33(12):876-883. ![]() [46]Yzer, S., Hollander, A.I., Lopez, I., et al., 2012. Ocular and extra-ocular features of patients with Leber congenital amaurosis and mutations in CEP290. Mol. Vis., 18:412-425. ![]() Journal of Zhejiang University-SCIENCE, 38 Zheda Road, Hangzhou
310027, China
Tel: +86-571-87952783; E-mail: cjzhang@zju.edu.cn Copyright © 2000 - 2025 Journal of Zhejiang University-SCIENCE |
Open peer comments: Debate/Discuss/Question/Opinion
<1>