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Journal of Zhejiang University SCIENCE B 2005 Vol.6 No.5 P.382~388


Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map

Author(s):  WANG Xu-sheng, ZHU Jun, MANSUETO Locedie, BRUSKIEWICH Richard

Affiliation(s):  Biometrics & Bioinformatics Unit, International Rice Research Institute DAPO 7777, Metro Manila, Philippines; more

Corresponding email(s):   r.Bruskiewich@cgiar.org

Key Words:  Rice genome sequence, Candidate genes, Drought stress, Quantitative Trait Loci (QTL)

WANG Xu-sheng, ZHU Jun, MANSUETO Locedie, BRUSKIEWICH Richard. Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map[J]. Journal of Zhejiang University Science B, 2005, 6(5): 382~388.

@article{title="Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map",
author="WANG Xu-sheng, ZHU Jun, MANSUETO Locedie, BRUSKIEWICH Richard",
journal="Journal of Zhejiang University Science B",
publisher="Zhejiang University Press & Springer",

%0 Journal Article
%T Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map
%A WANG Xu-sheng
%A ZHU Jun
%J Journal of Zhejiang University SCIENCE B
%V 6
%N 5
%P 382~388
%@ 1673-1581
%D 2005
%I Zhejiang University Press & Springer
%DOI 10.1631/jzus.2005.B0382

T1 - Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map
A1 - WANG Xu-sheng
A1 - ZHU Jun
A1 - MANSUETO Locedie
J0 - Journal of Zhejiang University Science B
VL - 6
IS - 5
SP - 382
EP - 388
%@ 1673-1581
Y1 - 2005
PB - Zhejiang University Press & Springer
ER -
DOI - 10.1631/jzus.2005.B0382

Genetic improvement for drought stress tolerance in rice involves the quantitative nature of the trait, which reflects the additive effects of several genetic loci throughout the genome. Yield components and related traits under stressed and well-water conditions were assayed in mapping populations derived from crosses of Azucena×IR64 and Azucena×Bala. To find the candidate rice genes underlying quantitative Trait Loci (QTL) in these populations, we conducted in silico analysis of a candidate region flanked by the genetic markers RM212 and RM319 on chromosome 1, proximal to the semi-dwarf (sd1) locus. A total of 175 annotated genes were identified from this region. These included 48 genes annotated by functional homology to known genes, 23 pseudogenes, 24 ab initio predicted genes supported by an alignment match to an EST (Expressed sequence tag) of unknown function, and 80 hypothetical genes predicted solely by ab initio means. Among these, 16 candidate genes could potentially be involved in drought stress response.

Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article


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