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Received: 2006-06-27

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Journal of Zhejiang University SCIENCE B 2007 Vol.8 No.5 P.359~364

http://doi.org/10.1631/jzus.2007.B0359


Scaling behavior of nucleotide cluster in DNA sequences


Author(s):  CHENG Jun, TONG Zi-shuang, ZHANG Lin-xi

Affiliation(s):  Department of Physics, Jinhua College of Profession and Technology, Jinhua 321017, China; more

Corresponding email(s):   jh_chengjun@163.com

Key Words:  Nucleotide cluster, DNA sequences, Scaling behavior


CHENG Jun, TONG Zi-shuang, ZHANG Lin-xi. Scaling behavior of nucleotide cluster in DNA sequences[J]. Journal of Zhejiang University Science B, 2007, 8(5): 359~364.

@article{title="Scaling behavior of nucleotide cluster in DNA sequences",
author="CHENG Jun, TONG Zi-shuang, ZHANG Lin-xi",
journal="Journal of Zhejiang University Science B",
volume="8",
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pages="359~364",
year="2007",
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doi="10.1631/jzus.2007.B0359"
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%T Scaling behavior of nucleotide cluster in DNA sequences
%A CHENG Jun
%A TONG Zi-shuang
%A ZHANG Lin-xi
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%I Zhejiang University Press & Springer
%DOI 10.1631/jzus.2007.B0359

TY - JOUR
T1 - Scaling behavior of nucleotide cluster in DNA sequences
A1 - CHENG Jun
A1 - TONG Zi-shuang
A1 - ZHANG Lin-xi
J0 - Journal of Zhejiang University Science B
VL - 8
IS - 5
SP - 359
EP - 364
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Y1 - 2007
PB - Zhejiang University Press & Springer
ER -
DOI - 10.1631/jzus.2007.B0359


Abstract: 
In this paper we study the scaling behavior of nucleotide cluster in 11 chromosomes of Encephalitozoon cuniculi Genome. The statistical distribution of nucleotide clusters for 11 chromosomes is characterized by the scaling behavior of P(S)∝e-αS, where S represents nucleotide cluster size. The cluster-size distribution P(S1+S2) with the total size of sequential C-G cluster and A-T cluster S1+S2 were also studied. P(S1+S2) follows exponential decay. There does not exist the case of large C-G cluster following large A-T cluster or large A-T cluster following large C-G cluster. We also discuss the relatively random walk length function L(n) and the local compositional complexity of nucleotide sequences based on a new model. These investigations may provide some insight into nucleotide cluster of DNA sequence.

Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article

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